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Lord C, Lorion J, Dettaï A, Watanabe S, Tsukamoto K, Cruaud C, Keith P.  2012.  From endemism to widespread distribution: phylogeography of three amphidromous Sicyopterus species (Teleostei: Gobioidei: Sicydiinae). Marine Ecology Progress Series. 455:269-285.
Li B, Dettaï A, Desoutter M, Chanet B.  2006.  Intérêts d'une approche croisée morpho-anatomique/moléculaire dans la résolution de relations de parenté : Exemple des Pleuronectiformes.. Journées annuelles de la Société Française de Systématique " Nouvelles de la systématique ".
Li B, Lecointre G.  2005.  Towards a reliability index for clades: An application on acanthomorph teleosts. 85th Annual Meeting ASIH, Tampa, Florida, July 6-11, 2005..
Li B, Dettaï A, Lecointre G.  2008.  Surprizing findings in the teleostean large-scale interrelationships. 20th International Congress of Zoology, Paris, August 26-29, 2008..
Li B, Lecointre G.  2009.  Formalizing reliability in the taxonomic congruence approach. Zoologica Scripta. 38:101-112.
Li B, Dettaï A, Cruaud C, Couloux A, Desoutter-Méniger M, Lecointre G.  2009.  RNF213, a new nuclear marker for acanthomorph phylogeny. Molecular Phylogenetics and Evolution. 50:345-363. Abstract
Li B, Dettaï A, Lecointre G.  2010.  rely.py, a python script to detect reliable clades. Molecular Phylogenetics and Evolution. 54:306-308. Abstract
Lecointre G.  1996.  Methodological aspects of molecular phylogeny of fishes. Zoological Studies. 35:161-177. Abstract
Lecointre G.  1996.  Absence of arguments. La Recherche. :6.
Lecointre G.  2003.  Cladistics at school in France: How children escaped from invertebrates.. Cladistics. 19:156.
Lecointre G.  2004.  Le statut de la parcimonie. Biosystema. 22:7-14.
Lecointre G.  2004.  What strategies for ichthyology? Cybium. 28:5-8. Abstract
Lecointre G.  2007.  Comparative anatomy: Paths to the future. Journal of Morphology. 268:1098.
Lecointre G.  2009.  Creationists and Evolution. La Pensée. :99+. Abstract
Lecointre G, Gallut C, Chanet B, Dettaï A.  2010.  Du rififi chez les poissons. Pour La Science. 390
Lecointre G.  2010.  Pour une approche moins restrictive de la Biodiversité. Pour la Science. 397:18-19.
Lecointre G, Philippe H, Lê HLVân, Le Guyader H.  1993.  Species sampling has a major impact on phylogenetic inference. Molecular Phylogenetics and Evolution. 2:205-224.
Lecointre G, Philippe H, Lê HLVân, Le Guyader H.  1994.  How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences Molecular Phylogenetics and Evolution. 3:292-309.
Lecointre G, Bonillo C, Ozouf-Costaz C, Hureau JC.  1997.  Molecular evidence for the origins of Antarctic fishes: paraphyly of the Bovichtidae and no indication for the monophyly of the Notothenioidei (Teleostei). Polar Biology. 18:193-208. Abstract
Lecointre G, Rachdi L, Darlu P, Denamur E.  1998.  Escherichia coli molecular phylogeny using the incongruence length difference test. Molecular Biology And Evolution. 15:1685-1695. Abstract
Lecointre G, Ozouf-Costaz C.  2004.  Les poissons antigel de l'océan Austral. Pour la Science. 320:48-54. Abstract
Lecointre G, Deleporte P.  2005.  Total evidence requires exclusion of phylogenetically misleading data. Zoologica Scripta. 34:101-117.
Lecointre G, Gallut C, Bonillo C, Couloux A, Ozouf-Costaz C, Dettaï A.  2011.  The Antarctic fish genus Artedidraco is paraphyletic (Teleostei, Notothenioidei, Artedidraconidae). Polar Biology. 24:1135-1145. Abstract
Leclerc MC, Barriel V, Lecointre G, de Reviers B.  1998.  Low divergence in rDNA ITS sequences among five species of Fucus (Phaeophyceae) suggests a very recent radiation. Journal of Molecular Evolution. 46:115-120. Abstract
Lavoue S, Bigorne R, Lecointre G, Agnese JF.  2000.  Phylogenetic relationships of mormyrid electric fishes (Mormyridae; Teleostei) inferred from cytochrome b sequences. Molecular Phylogenetics and Evolution. 14:1-10. Abstract