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Darlu P, Lecointre G.  2002.  When does the incongruence length difference test fail? Molecular Biology And Evolution. 19:432-437. Abstract
Lecointre G.  2004.  What strategies for ichthyology? Cybium. 28:5-8. Abstract
Vidal N, Lecointre G.  1998.  Weighting and congruence: A case study based on three mitochondrial genes in pitvipers. Molecular Phylogenetics and Evolution. 9:366-374. Abstract
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Chanet B, Guintard C, Fusellier M, Tavernier C, Betti E, Madec S, Richaudeau Y, Raphaël C, Lecointre G.  2012.  Visceral anatomy of ocean sunfish (Mola mola (L. 1758), Molidae, Tetraodontiformes) and anglerfish (Lophius piscatorius (L. 1758), Lophiidae, Lophiiformes) investigated by modern imaging techniques. Comptes Rendus Biologies. 335 Abstract
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Giordano D, Parrilli E, Dettaï A, Russo R, Barbiero G, Maritio G, Lecointre G, Di Prisco G, Tutino L, Verde C.  2007.  The truncated hemoglobins in the Antarctic psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125. Gene. 398:69-77. Abstract
Dettaï A, Berkani M, Lautrédou A-C, Li B, Couloux A, Lecointre G, Ozouf-Costaz C, Gallut C.  2012.  Tracking the elusive monophyly of nototheniid fishes (Teleostei) with multiple mitochondrial and nuclear markers. Marine Genomics. 8:49-58. Abstract
Li B, Lecointre G.  2005.  Towards a reliability index for clades: An application on acanthomorph teleosts. 85th Annual Meeting ASIH, Tampa, Florida, July 6-11, 2005..
Lecointre G, Deleporte P.  2005.  Total evidence requires exclusion of phylogenetically misleading data. Zoologica Scripta. 34:101-117.
Chen W-J, Bonillo C, Lecointre G.  2000.  Taxonomic congruence as a tool to discover new clades in the acanthomorph (Teleostei) radiation. Program Book and Abstracts, 80th Annual Meeting ASIH, La Paz, Mexico, June 14-20, 2000.. :369.
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Li B, Dettaï A, Lecointre G.  2008.  Surprizing findings in the teleostean large-scale interrelationships. 20th International Congress of Zoology, Paris, August 26-29, 2008..
Germot A, Lecointre G, Plouhinec JL, Le Mentec C, Girardot F, Mazan S.  2001.  Structural evolution of Otx genes in craniates. Molecular Biology And Evolution. 18:1668-1678. Abstract
Markov G, Lecointre G, Demeneix B, Laudet V.  2008.  The "street light syndrome'', or how protein taxonomy can bias experimental manipulations. BioEssays. 30:349-357. Abstract
Lecointre G, Philippe H, Lê HLVân, Le Guyader H.  1993.  Species sampling has a major impact on phylogenetic inference. Molecular Phylogenetics and Evolution. 2:205-224.
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Li B, Dettaï A, Cruaud C, Couloux A, Desoutter-Méniger M, Lecointre G.  2009.  RNF213, a new nuclear marker for acanthomorph phylogeny. Molecular Phylogenetics and Evolution. 50:345-363. Abstract
Chen W-J, Bonillo C, Lecointre G.  2003.  Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. 26:262-288. Abstract
Li B, Dettaï A, Lecointre G.  2010.  rely.py, a python script to detect reliable clades. Molecular Phylogenetics and Evolution. 54:306-308. Abstract
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Lecointre G.  2010.  Pour une approche moins restrictive de la Biodiversité. Pour la Science. 397:18-19.
Bjedov I, Lecointre G, Tenaillon O, Vaury C, Radman M, Taddei F, Denamur E, Matic I.  2003.  Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli. DNA Repair. 2:417-426. Abstract
Vuillaumier S, Hinnrasky J, Lecointre G, Lapoumeroulie C, Koltenboeck B, Lehn P, Puchelle E, Denamur E.  1997.  Polygenetic analysis of CFTR gene expression in mammalian species: Could the rabbit lead to a accurate CF animal model? M/S : médecine sciences. 13:673-677. Abstract
Santini F, Lecointre G.  2005.  Phylogeny of the Caproidae (Acanthomorpha) with comments on their relationship with Tetraodontiformes and Acanthuroidae. Integrative and Comparative Biology. 45:1189.
Verde C, Lecointre G, Di Prisco G.  2007.  The phylogeny of polar fishes and the structure, function and molecular evolution of hemoglobin. Polar Biology. 30:523-539. Abstract
Derome N, Chen W-J, Dettaï A, Bonillo C, Lecointre G.  2002.  Phylogeny of Antarctic dragonfishes (Bathydraconidae, Notothenioidei, Teleostei) and related families based on their anatomy and two mitochondrial genes. Molecular Phylogenetics and Evolution. 24:139-152. Abstract
Lavoue S, Bigorne R, Lecointre G, Agnese JF.  2000.  Phylogenetic relationships of mormyrid electric fishes (Mormyridae; Teleostei) inferred from cytochrome b sequences. Molecular Phylogenetics and Evolution. 14:1-10. Abstract
Lautrédou A-C, Hinsinger DD, Gallut C, Cheng C-HC, Berkani M, Ozouf-Costaz C, Cruaud C, Lecointre G, Dettaï A.  2012.  Phylogenetic footprints of an Antarctic radiation: the Trematominae (Notothenioidei, Teleostei). Molecular Phylogenetics and Evolution. 65:87-101. Abstract
Mollaret I, Jamieson BGM, Adlard RD, Hugall A, Lecointre G, Chombard C, Justine JL.  1997.  Phylogenetic analysis of the Monogenea and their relationships with Digenea and Eucestoda inferred from 28S rDNA sequences. Molecular And Biochemical Parasitology. 90:433-438. Abstract